Last updated on 2024-08-16 09:49:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 6.67 | 227.57 | 234.24 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 6.81 | 141.72 | 148.53 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 372.03 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 388.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 10.00 | 207.00 | 217.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 8.14 | 213.04 | 221.18 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 8.20 | 214.28 | 222.48 | OK | |
| r-release-macos-arm64 | 1.1.0 | 99.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 172.00 | OK | |||
| r-release-windows-x86_64 | 1.1.0 | 10.00 | 203.00 | 213.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 111.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 196.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 12.00 | 281.00 | 293.00 | OK |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘tgp’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘BayesMassBal-Ex.R’ failed
The error most likely occurred in:
> ### Name: mainEff
> ### Title: Main Effects
> ### Aliases: mainEff
>
> ### ** Examples
>
>
> ## Importing Data, generating BMB object
> y <- importObservations(file = system.file("extdata", "twonode_example.csv",
+ package = "BayesMassBal"),
+ header = TRUE, csv.params = list(sep = ";"))
>
> C <- matrix(c(1,-1,0,-1,0,0,1,-1,0,-1), byrow = TRUE, ncol = 5, nrow = 2)
> X <- constrainProcess(C = C)
>
> BMB_example <- BMB(X = X, y = y, cov.structure = "indep",
+ BTE = c(10,200,1), lml = FALSE, verb=0)
>
> fn_example <- function(X,ybal){
+ cu.frac <- 63.546/183.5
+ feed.mass <- ybal$CuFeS2[1] + ybal$gangue[1]
+ ## Concentrate mass per ton feed
+ con.mass <- (ybal$CuFeS2[3] + ybal$gangue[3])/feed.mass
+ ## Copper mass per ton feed
+ cu.mass <- (ybal$CuFeS2[3]*cu.frac)/feed.mass
+ gam <- c(-1,-1/feed.mass,cu.mass,-con.mass,-cu.mass,-con.mass)
+ f <- X %*% gam
+ return(f)
+ }
>
> rangex <- matrix(c(4.00 ,6.25,1125,1875,3880,9080,20,60,96,208,20.0,62.5),
+ ncol = 6, nrow = 2)
>
> mE_example <- mainEff(BMB_example, fn = "fn_example",rangex = rangex,xj = 3, N = 15, res = 4)
Warning in mainEff(BMB_example, fn = "fn_example", rangex = rangex, xj = 3, :
The tgp package is required
Error in LHS(res, r.x) : could not find function "LHS"
Calls: mainEff
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Two_Node_Process.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/Two_Node_Process_files/figure-html/multiprocess-1.png
288x144 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 5429 bytes
Input file size = 5507 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4294
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4294
Output IDAT size = 4294 bytes (1135 bytes decrease)
Output file size = 4372 bytes (1135 bytes = 20.61% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/Two_Node_Process_files/figure-html/feedplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10469 bytes
Input file size = 10559 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8702
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8702
Output IDAT size = 8702 bytes (1767 bytes decrease)
Output file size = 8780 bytes (1779 bytes = 16.85% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/Two_Node_Process_files/figure-html/traceplot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22026 bytes
Input file size = 22128 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17400
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17400
Output IDAT size = 17400 bytes (4626 bytes decrease)
Output file size = 17478 bytes (4650 bytes = 21.01% decrease)
Quitting from lines 172-187 [maineff] (Two_Node_Process.Rmd)
Error: processing vignette 'Two_Node_Process.Rmd' failed with diagnostics:
could not find function "LHS"
--- failed re-building ‘Two_Node_Process.Rmd’
--- re-building ‘ssEst.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/ssEst_files/figure-html/datagen-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6460 bytes
Input file size = 7318 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5890
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5890
Output IDAT size = 5890 bytes (570 bytes decrease)
Output file size = 5968 bytes (1350 bytes = 18.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/ssEst_files/figure-html/plot1-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13954 bytes
Input file size = 14044 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11039
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11039
Output IDAT size = 11039 bytes (2915 bytes decrease)
Output file size = 11117 bytes (2927 bytes = 20.84% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/BayesMassBal.Rcheck/vign_test/BayesMassBal/vignettes/ssEst_files/figure-html/ssConst-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16727 bytes
Input file size = 16829 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13035
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13035
Output IDAT size = 13035 bytes (3692 bytes decrease)
Output file size = 13113 bytes (3716 bytes = 22.08% decrease)
--- finished re-building ‘ssEst.Rmd’
SUMMARY: processing the following file failed:
‘Two_Node_Process.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang