Last updated on 2024-06-29 11:49:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 6.32 | 1591.84 | 1598.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 3.97 | 1084.19 | 1088.16 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 1918.52 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 1848.03 | OK | |||
| r-devel-windows-x86_64 | 0.1.1 | 8.00 | 981.00 | 989.00 | OK | |
| r-patched-linux-x86_64 | 0.1.1 | 3.98 | 1488.81 | 1492.79 | OK | |
| r-release-linux-x86_64 | 0.1.1 | 4.54 | 1513.54 | 1518.08 | OK | |
| r-release-macos-arm64 | 0.1.1 | 246.00 | OK | |||
| r-release-macos-x86_64 | 0.1.1 | 501.00 | OK | |||
| r-release-windows-x86_64 | 0.1.1 | 7.00 | 979.00 | 986.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 198.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.1.1 | 835.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.1.1 | 8.00 | 1391.00 | 1399.00 | OK |
Version: 0.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a01_Introduction.Rmd’
...
> library(here)
here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmp5Q1os2/filef346697eed1f/vignettes
> knitr::include_graphics(here("vignettes/workflow.png"))
When sourcing ‘a01_Introduction.R’:
Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmp5Q1os2/filef346697eed1f/vignettes/vignettes/workflow.png"
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
when running code in ‘a02_Generate_a_sequence_cohort_set.Rmd’
...
> library(here)
here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpYhPWDc/filef3532cb66832/vignettes
> knitr::include_graphics(here("vignettes/1-NoRestrictions.png"))
When sourcing ‘a02_Generate_a_sequence_cohort_set.R’:
Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpYhPWDc/filef3532cb66832/vignettes/vignettes/1-NoRestrictions.png"
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘a01_Introduction.Rmd’ using ‘UTF-8’... failed
‘a02_Generate_a_sequence_cohort_set.Rmd’ using ‘UTF-8’... failed
‘a03_Summarise_sequence_ratios.Rmd’ using ‘UTF-8’... [8s/8s] OK
‘a04_Visualise_sequence_ratios.Rmd’ using ‘UTF-8’... [8s/9s] OK
‘a05_Summarise_temporal_symmetry.Rmd’ using ‘UTF-8’... [7s/8s] OK
‘a06_Visualise_temporal_symmetry.Rmd’ using ‘UTF-8’... [7s/8s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a01_Introduction.Rmd’
...
> library(here)
here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp3P0WM0/file6cb47320bf12/vignettes
> knitr::include_graphics(here("vignettes/workflow.png"))
When sourcing ‘a01_Introduction.R’:
Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp3P0WM0/file6cb47320bf12/vignettes/vignettes/workflow.png"
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
when running code in ‘a02_Generate_a_sequence_cohort_set.Rmd’
...
> library(here)
here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpiEvzAF/file6cba67fdf27/vignettes
> knitr::include_graphics(here("vignettes/1-NoRestrictions.png"))
When sourcing ‘a02_Generate_a_sequence_cohort_set.R’:
Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpiEvzAF/file6cba67fdf27/vignettes/vignettes/1-NoRestrictions.png"
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
when running code in ‘a04_Visualise_sequence_ratios.Rmd’
...
> if (!dir.exists(Sys.getenv("EUNOMIA_DATA_FOLDER"))) dir.create(Sys.getenv("EUNOMIA_DATA_FOLDER"))
> if (!CDMConnector::eunomia_is_available()) CDMConnector::downloadEunomiaData()
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Warning in utils::download.file(url = glue::glue("https://example-data.ohdsi.dev/{datasetName}.zip"), :
URL 'https://example-data.ohdsi.dev/GiBleed.zip': Timeout of 5000 seconds was reached
When sourcing ‘a04_Visualise_sequence_ratios.R’:
Error: cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Execution halted
when running code in ‘a05_Summarise_temporal_symmetry.Rmd’
...
> if (!dir.exists(Sys.getenv("EUNOMIA_DATA_FOLDER"))) dir.create(Sys.getenv("EUNOMIA_DATA_FOLDER"))
> if (!CDMConnector::eunomia_is_available()) CDMConnector::downloadEunomiaData()
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Warning in utils::download.file(url = glue::glue("https://example-data.ohdsi.dev/{datasetName}.zip"), :
URL 'https://example-data.ohdsi.dev/GiBleed.zip': Timeout of 5000 seconds was reached
When sourcing ‘a05_Summarise_temporal_symmetry.R’:
Error: cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Execution halted
when running code in ‘a06_Visualise_temporal_symmetry.Rmd’
...
> if (!dir.exists(Sys.getenv("EUNOMIA_DATA_FOLDER"))) dir.create(Sys.getenv("EUNOMIA_DATA_FOLDER"))
> if (!CDMConnector::eunomia_is_available()) CDMConnector::downloadEunomiaData()
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Warning in utils::download.file(url = glue::glue("https://example-data.ohdsi.dev/{datasetName}.zip"), :
URL 'https://example-data.ohdsi.dev/GiBleed.zip': Timeout of 5000 seconds was reached
When sourcing ‘a06_Visualise_temporal_symmetry.R’:
Error: cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Execution halted
‘a01_Introduction.Rmd’ using ‘UTF-8’... failed
‘a02_Generate_a_sequence_cohort_set.Rmd’ using ‘UTF-8’... failed
‘a03_Summarise_sequence_ratios.Rmd’ using ‘UTF-8’... [15s/15s] OK
‘a04_Visualise_sequence_ratios.Rmd’ using ‘UTF-8’... failed
‘a05_Summarise_temporal_symmetry.Rmd’ using ‘UTF-8’... failed
‘a06_Visualise_temporal_symmetry.Rmd’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-x86_64
Version: 0.1.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘a01_Introduction.Rmd’ using rmarkdown
--- finished re-building ‘a01_Introduction.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘a02_Generate_a_sequence_cohort_set.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Quitting from lines 23-26 [unnamed-chunk-2] (a02_Generate_a_sequence_cohort_set.Rmd)
Error: processing vignette 'a02_Generate_a_sequence_cohort_set.Rmd' failed with diagnostics:
cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
--- failed re-building ‘a02_Generate_a_sequence_cohort_set.Rmd’
--- re-building ‘a03_Summarise_sequence_ratios.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Quitting from lines 23-26 [unnamed-chunk-2] (a03_Summarise_sequence_ratios.Rmd)
Error: processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:
cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
--- failed re-building ‘a03_Summarise_sequence_ratios.Rmd’
--- re-building ‘a04_Visualise_sequence_ratios.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Quitting from lines 22-25 [unnamed-chunk-2] (a04_Visualise_sequence_ratios.Rmd)
Error: processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:
cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
--- failed re-building ‘a04_Visualise_sequence_ratios.Rmd’
--- re-building ‘a05_Summarise_temporal_symmetry.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Quitting from lines 23-26 [unnamed-chunk-2] (a05_Summarise_temporal_symmetry.Rmd)
Error: processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:
cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
--- failed re-building ‘a05_Summarise_temporal_symmetry.Rmd’
--- re-building ‘a06_Visualise_temporal_symmetry.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Quitting from lines 23-26 [unnamed-chunk-2] (a06_Visualise_temporal_symmetry.Rmd)
Error: processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:
cannot open URL 'https://example-data.ohdsi.dev/GiBleed.zip'
--- failed re-building ‘a06_Visualise_temporal_symmetry.Rmd’
SUMMARY: processing the following files failed:
‘a02_Generate_a_sequence_cohort_set.Rmd’
‘a03_Summarise_sequence_ratios.Rmd’
‘a04_Visualise_sequence_ratios.Rmd’
‘a05_Summarise_temporal_symmetry.Rmd’
‘a06_Visualise_temporal_symmetry.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64