Last updated on 2024-05-31 20:54:33 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ade4 | 12 | ||
| ade4TkGUI | 12 | ||
| adegraphics | 3 | 9 | |
| adephylo | 12 | ||
| adespatial | 12 | ||
| CINID | 12 | ||
| DRomics | 8 | 5 | |
| fitdistrplus | 1 | 11 | |
| Interatrix | 12 | ||
| LDcorSV | 12 | ||
| LifemapR | 13 | ||
| MareyMap | 13 | ||
| Mondrian | 12 | ||
| nlsMicrobio | 13 | ||
| nlstools | 13 | ||
| OnAge | 12 | ||
| phylter | 9 | 3 |
Current CRAN status: NOTE: 12
Version: 1.7-22
Check: Rd files
Result: NOTE
checkRd: (-1) varipart.Rd:19: Lost braces
19 | \item{type}{a character specifying the algorithm which should be used to adjust R-squared (either \code{"simulated"} or \ code{"parametric"}).}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.7-22
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
R 1.4Mb
data 3.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.7-22
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘sp’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 12
Current CRAN status: NOTE: 3, OK: 9
Version: 1.0-21
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
doc 2.7Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 8, OK: 5
Version: 2.5-2
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
doc 2.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 1.1-11
Check: tests
Result: ERROR
Running 't-CIcdfplot.R' [12s]
Running 't-Surv2fitdistcens.R' [2s]
Running 't-bootdist.R' [5s]
Running 't-bootdistcens.R' [3s]
Running 't-cdfcomp.R' [3s]
Running 't-cdfcompcens.R' [4s]
Running 't-cvg-algo.R' [0s]
Running 't-denscomp.R' [4s]
Running 't-descdist.R' [2s]
Running 't-detectbound.R' [1s]
Running 't-fitbench.R' [0s]
Running 't-fitdist-customoptim.R' [2s]
Running 't-fitdist.R' [3s]
Running 't-fitdistcens.R' [4s]
Running 't-gen-max-spacing-estim.R' [2s]
Running 't-getparam.R' [1s]
Running 't-gofstat.R' [2s]
Running 't-init-actuar.R' [0s]
Running 't-llplot.R' [3s]
Running 't-lnL-surf.R' [2s]
Running 't-logLik-vcov-coef.R' [2s]
Running 't-manageparam.R' [2s]
Running 't-mgedist.R' [3s]
Running 't-mledist-cens.R' [2s]
Running 't-mledist-nocens.R' [2s]
Running 't-mledist-paramsupport.R' [3s]
Running 't-mmedist.R' [4s]
Running 't-msedist.R' [3s]
Running 't-parallel.R' [0s]
Running 't-plotdist.R' [2s]
Running 't-plotdistcens.R' [2s]
Running 't-ppcomp.R' [3s]
Running 't-ppcompcens.R' [3s]
Running 't-prefit.R' [2s]
Running 't-qme-discrete.R' [6s]
Running 't-qmedist.R' [5s]
Running 't-qqcomp.R' [4s]
Running 't-qqcompcens.R' [4s]
Running 't-quantiledist.R' [2s]
Running 't-startfixarg-overall.R' [3s]
Running 't-startingvalues.R' [2s]
Running 't-util-npmle.R' [2s]
Running 't-util-npsurv-mainfunction.R' [2s]
Running 't-util-testdensity.R' [2s]
Running 't-weird-ppcomp-cens.R' [2s]
Running 't-weird-qqcomp-cens.R' [2s]
Running the tests in 'tests/t-prefit.R' failed.
Complete output:
> require(fitdistrplus)
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
> nsample <- 10
>
> # (1) gamma
> x <- rgamma(nsample, 5/2, 7/2)
>
> prefit(x, "gamma", "mle", list(shape=3, scale=3), lower=-Inf, upper=Inf, silent=TRUE, control=list(trace=1, REPORT=1))
initial value 5.529474
iter 2 value 4.334361
iter 3 value 3.955832
iter 4 value 3.797547
iter 5 value 3.766011
iter 6 value 3.765256
iter 7 value 3.765252
iter 8 value 3.765251
iter 9 value 3.765250
iter 9 value 3.765250
iter 9 value 3.765250
final value 3.765250
converged
$shape
[1] 3.072675
$scale
[1] 4.419831
> prefit(x, "gamma", "mle", list(shape=1, scale=1), lower=-Inf, upper=Inf, silent=TRUE)
$shape
[1] 3.07265
$scale
[1] 4.419797
>
> prefit(x, "gamma", "mle", list(shape=3), fix.arg=list(scale=7/2), lower=-Inf, upper=Inf, silent=TRUE)
$shape
[1] 0.5378913
>
> prefit(x, "gamma", "qme", list(shape=1, scale=1), probs=1:2/3, lower=-Inf, upper=Inf, silent=TRUE)
$shape
[1] 5.503738
$scale
[1] 8.52943
>
> prefit(x, "gamma", "mge", list(shape=1, scale=1), gof="CvM", lower=-Inf, upper=Inf, silent=TRUE)
$shape
[1] 2.778961
$scale
[1] 4.072493
> prefit(x, "gamma", "mge", list(shape=1, scale=1), gof="AD", lower=-Inf, upper=Inf, silent=TRUE)
$shape
[1] 2.643498
$scale
[1] 3.820047
>
> # (2) geometric
> x <- rgeom(nsample, 1/7)
> prefit(x, "geom", "mle", list(prob=1/2), lower=-Inf, upper=Inf, silent=TRUE)
$prob
[1] 0.1923077
> tbx <- table(x)
> prefit(as.numeric(names(tbx)), "geom", "mle", list(prob=1/2), lower=-Inf, upper=Inf, silent=TRUE, weights=tbx)
$prob
[1] 0.1923077
> prefit(x, "geom", "qme", list(prob=1/2), probs=1/2, lower=-Inf, upper=Inf)
$prob
[1] 0.3100255
>
>
> # (3) Pareto
> require(actuar)
Loading required package: actuar
Attaching package: 'actuar'
The following objects are masked from 'package:stats':
sd, var
The following object is masked from 'package:grDevices':
cm
> x <- rpareto(nsample, 6, 2)
>
> prefit(x, "pareto", "mme", list(shape=10, scale=10), order=1:2, memp=function(x, order) mean(x^order), lower=-Inf, upper=Inf)
Error in prefit(x, "pareto", "mme", list(shape = 10, scale = 10), order = 1:2, :
unsuccessful pre-fitting process
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 12
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 12
Current CRAN status: NOTE: 9, OK: 3
Version: 0.9.11
Check: Rd files
Result: NOTE
checkRd: (-1) phylter.Rd:51: Lost braces; missing escapes or markup?
51 | the output ({out$DiscardedGenes}).}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64