Last updated on 2024-05-31 20:54:47 CEST.
| Package | WARN | NOTE |
|---|---|---|
| glmmTMB | 2 | 11 |
Current CRAN status: WARN: 2, NOTE: 11
Version: 1.1.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘dotwhisker’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘covstruct.rmd’ using rmarkdown
--- finished re-building ‘covstruct.rmd’
--- re-building ‘hacking.rmd’ using rmarkdown
--- finished re-building ‘hacking.rmd’
--- re-building ‘mcmc.rmd’ using rmarkdown
--- finished re-building ‘mcmc.rmd’
--- re-building ‘miscEx.rmd’ using rmarkdown
--- finished re-building ‘miscEx.rmd’
--- re-building ‘parallel.rmd’ using rmarkdown
--- finished re-building ‘parallel.rmd’
--- re-building ‘priors.rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/priors_files/figure-html/culcita_comp-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20960 bytes
Input file size = 21062 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935
Output IDAT size = 17935 bytes (3025 bytes decrease)
Output file size = 18013 bytes (3049 bytes = 14.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/priors_files/figure-html/gopher_comp-1.png
672x480 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5973 bytes
Input file size = 6792 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4990
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4990
Output IDAT size = 4990 bytes (983 bytes decrease)
Output file size = 5068 bytes (1724 bytes = 25.38% decrease)
--- finished re-building ‘priors.rmd’
--- re-building ‘sim.rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/plots-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32045 bytes
Input file size = 32159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25865
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25865
Output IDAT size = 25865 bytes (6180 bytes decrease)
Output file size = 25943 bytes (6216 bytes = 19.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/ss_plot-1.png
960x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81174 bytes
Input file size = 81360 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73059
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73059
Output IDAT size = 73059 bytes (8115 bytes decrease)
Output file size = 73137 bytes (8223 bytes = 10.11% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/plot_acf-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15014 bytes
Input file size = 15104 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12371
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12371
Output IDAT size = 12371 bytes (2643 bytes decrease)
Output file size = 12449 bytes (2655 bytes = 17.58% decrease)
--- finished re-building ‘sim.rmd’
--- re-building ‘troubleshooting.rmd’ using rmarkdown
--- finished re-building ‘troubleshooting.rmd’
--- re-building ‘glmmTMB.Rnw’ using knitr
Error: processing vignette 'glmmTMB.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'glmmTMB.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.176 \hlkwd{library}\hldef
{(}\hlsng{"glmmTMB"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.176
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘glmmTMB.Rnw’
--- re-building ‘model_evaluation.Rnw’ using knitr
Failed with error: 'there is no package called 'dotwhisker''
Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'model_evaluation.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.144 \hlkwd{library}\hldef
{(glmmTMB)}
?
! Emergency stop.
! Emergency stop.
l.144
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘model_evaluation.Rnw’
SUMMARY: processing the following files failed:
‘glmmTMB.Rnw’ ‘model_evaluation.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.9
Check: installed package size
Result: NOTE
installed size is 12.0Mb
sub-directories of 1Mb or more:
doc 1.3Mb
libs 6.5Mb
test_data 2.3Mb
vignette_data 1.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.9
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 9.8Mb
sub-directories of 1Mb or more:
doc 1.3Mb
libs 4.4Mb
test_data 2.3Mb
vignette_data 1.1Mb
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.9
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘covstruct.rmd’ using rmarkdown
--- finished re-building ‘covstruct.rmd’
--- re-building ‘hacking.rmd’ using rmarkdown
--- finished re-building ‘hacking.rmd’
--- re-building ‘mcmc.rmd’ using rmarkdown
--- finished re-building ‘mcmc.rmd’
--- re-building ‘miscEx.rmd’ using rmarkdown
--- finished re-building ‘miscEx.rmd’
--- re-building ‘parallel.rmd’ using rmarkdown
--- finished re-building ‘parallel.rmd’
--- re-building ‘priors.rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/priors_files/figure-html/culcita_comp-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20960 bytes
Input file size = 21062 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935
Output IDAT size = 17935 bytes (3025 bytes decrease)
Output file size = 18013 bytes (3049 bytes = 14.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/priors_files/figure-html/gopher_comp-1.png
672x480 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5973 bytes
Input file size = 6792 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4990
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4990
Output IDAT size = 4990 bytes (983 bytes decrease)
Output file size = 5068 bytes (1724 bytes = 25.38% decrease)
--- finished re-building ‘priors.rmd’
--- re-building ‘sim.rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/plots-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32045 bytes
Input file size = 32159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25865
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25865
Output IDAT size = 25865 bytes (6180 bytes decrease)
Output file size = 25943 bytes (6216 bytes = 19.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/ss_plot-1.png
960x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81174 bytes
Input file size = 81360 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73059
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73059
Output IDAT size = 73059 bytes (8115 bytes decrease)
Output file size = 73137 bytes (8223 bytes = 10.11% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmTMB.Rcheck/vign_test/glmmTMB/vignettes/sim_files/figure-html/plot_acf-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15014 bytes
Input file size = 15104 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12371
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12371
Output IDAT size = 12371 bytes (2643 bytes decrease)
Output file size = 12449 bytes (2655 bytes = 17.58% decrease)
--- finished re-building ‘sim.rmd’
--- re-building ‘troubleshooting.rmd’ using rmarkdown
--- finished re-building ‘troubleshooting.rmd’
--- re-building ‘glmmTMB.Rnw’ using knitr
Error: processing vignette 'glmmTMB.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'glmmTMB.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.176 \hlkwd{library}\hldef
{(}\hlsng{"glmmTMB"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.176
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘glmmTMB.Rnw’
--- re-building ‘model_evaluation.Rnw’ using knitr
Failed with error: 'there is no package called 'dotwhisker''
Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'model_evaluation.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.144 \hlkwd{library}\hldef
{(glmmTMB)}
?
! Emergency stop.
! Emergency stop.
l.144
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘model_evaluation.Rnw’
SUMMARY: processing the following files failed:
‘glmmTMB.Rnw’ ‘model_evaluation.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64