# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             bioconductor FelixErnst Structstrings 1.20.0
revision            0
categories-append   bioconductor
maintainers         nomaintainer
license             Artistic-2
description         Implementation of the dot bracket annotations with Biostrings
long_description    ${name} implements the widely used dot bracket annotation \
                    for storing base pairing information in structured RNA.
homepage            https://github.com/FelixErnst/Structstrings
checksums           rmd160  4034158efe7a6042dd258d96959a43d2c84d2e37 \
                    sha256  e9efa165ccff880429acba1b2d149ead365fda46ed3b14b2723bb1077b9c49cd \
                    size    375653

depends_lib-append  port:R-BiocGenerics \
                    port:R-Biostrings \
                    port:R-crayon \
                    port:R-IRanges \
                    port:R-S4Vectors \
                    port:R-stringi \
                    port:R-stringr \
                    port:R-XVector

patchfiles-append   patch-no-tRNAscanImport.diff

depends_test-append port:R-BiocStyle \
                    port:R-knitr \
                    port:R-rmarkdown \
                    port:R-testthat

# Tests pass, one example from vignettes fails.
test.run            yes